Here is a list of all class members with links to the classes they belong to:

- s -

• safe_synchronize_AnalysisStats() : Bio::EnsEMBL::Hive::Queen
• save_collections() : Bio::EnsEMBL::Hive::DBSQL::DBAdaptor
• say_with_header() : Bio::EnsEMBL::Hive::Process
• schedule_workers() : Bio::EnsEMBL::Hive::Scheduler
• schedule_workers_resync_if_necessary() : Bio::EnsEMBL::Hive::Scheduler
• scheduler_say() : Bio::EnsEMBL::Hive::Scheduler
• script_usage() : Bio::EnsEMBL::Hive::Utils
• seconds_since_last_update() : Bio::EnsEMBL::Hive::AnalysisStats
• semaphore_count() : Bio::EnsEMBL::Hive::AnalysisJob
• semaphored_job_count() : Bio::EnsEMBL::Hive::AnalysisStats
• semaphored_job_id() : Bio::EnsEMBL::Hive::AnalysisJob
• set() : Bio::EnsEMBL::Hive::Utils::Config
• set_and_update_status() : Bio::EnsEMBL::Hive::AnalysisJob , Bio::EnsEMBL::Hive::Worker
• set_default_meadow_type() : Bio::EnsEMBL::Hive::Valley
• signature() : Bio::EnsEMBL::Hive::Meadow
• signature_template() : Bio::EnsEMBL::Hive::Accumulator
• slicer() : Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor , Bio::EnsEMBL::Hive::DBSQL::ObjectAdaptor
• sort_stats_by_suitability() : Bio::EnsEMBL::Hive::Scheduler
• special_batch() : Bio::EnsEMBL::Hive::Worker
• specialize_and_compile_wrapper() : Bio::EnsEMBL::Hive::Worker
• specialize_worker() : Bio::EnsEMBL::Hive::Queen
• split_for_bash() : Bio::EnsEMBL::Hive::Utils
• sql() : Bio::EnsEMBL::Hive::DBSQL::StatementHandle
• start_job_output_redirection() : Bio::EnsEMBL::Hive::Worker
• stats() : Bio::EnsEMBL::Hive::Analysis
• status() : Bio::EnsEMBL::Hive::AnalysisJob , Bio::EnsEMBL::Hive::AnalysisStats , Bio::EnsEMBL::Hive::Worker
• status_of_all_our_workers() : Bio::EnsEMBL::Hive::Meadow::LOCAL , Bio::EnsEMBL::Hive::Meadow::LSF
• stderr_file() : Bio::EnsEMBL::Hive::AnalysisJob
• stdout_file() : Bio::EnsEMBL::Hive::AnalysisJob
• stop_job_output_redirection() : Bio::EnsEMBL::Hive::Worker
• store() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
• store_hive_message() : Bio::EnsEMBL::Hive::DBSQL::LogMessageAdaptor
• store_if_needed() : Bio::EnsEMBL::Hive::DBSQL::AnalysisDataAdaptor
• store_job_message() : Bio::EnsEMBL::Hive::DBSQL::LogMessageAdaptor
• store_jobs_and_adjust_counters() : Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
• store_or_update_one() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
• store_out_files() : Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
• store_resource_usage() : Bio::EnsEMBL::Hive::Queen
• store_worker_message() : Bio::EnsEMBL::Hive::DBSQL::LogMessageAdaptor
• strict_hash_format() : Bio::EnsEMBL::Hive::Process , Bio::EnsEMBL::Hive::RunnableDB::Dummy , Bio::EnsEMBL::Hive::RunnableDB::SqlCmd , Bio::EnsEMBL::Hive::RunnableDB::SystemCmd
• stringify() : Bio::EnsEMBL::Hive::Utils
• struct_name() : Bio::EnsEMBL::Hive::Accumulator
• submission_cmd_args() : Bio::EnsEMBL::Hive::ResourceDescription
• submit_workers() : Bio::EnsEMBL::Hive::Meadow::LOCAL , Bio::EnsEMBL::Hive::Meadow::LSF
• substitute() : Bio::EnsEMBL::Hive::DependentOptions
• suggest_analysis_to_specialize_a_worker() : Bio::EnsEMBL::Hive::Scheduler
• sync_lock() : Bio::EnsEMBL::Hive::AnalysisStats
• synchronize_AnalysisStats() : Bio::EnsEMBL::Hive::Queen
• synchronize_hive() : Bio::EnsEMBL::Hive::Queen