Here is a list of all class members with links to the classes they belong to:

- p -

• param() : Bio::EnsEMBL::Hive::Params , Bio::EnsEMBL::Hive::Process
• param_defaults() : Bio::EnsEMBL::Hive::Process , Bio::EnsEMBL::Hive::RunnableDB::DatabaseDumper , Bio::EnsEMBL::Hive::RunnableDB::Dummy , Bio::EnsEMBL::Hive::RunnableDB::FailureTest , Bio::EnsEMBL::Hive::RunnableDB::FastaFactory , Bio::EnsEMBL::Hive::RunnableDB::JobFactory , Bio::EnsEMBL::Hive::RunnableDB::LongMult::AddTogether , Bio::EnsEMBL::Hive::RunnableDB::LongMult::DigitFactory , Bio::EnsEMBL::Hive::RunnableDB::LongMult::PartMultiply , Bio::EnsEMBL::Hive::RunnableDB::MySQLTransfer , Bio::EnsEMBL::Hive::RunnableDB::NotifyByEmail , Bio::EnsEMBL::Hive::RunnableDB::SqlHealthcheck , Bio::EnsEMBL::Hive::RunnableDB::SystemCmd
• param_exists() : Bio::EnsEMBL::Hive::Params
• param_id_stack() : Bio::EnsEMBL::Hive::AnalysisJob
• param_init() : Bio::EnsEMBL::Hive::Params
• param_is_defined() : Bio::EnsEMBL::Hive::Params , Bio::EnsEMBL::Hive::Process
• param_required() : Bio::EnsEMBL::Hive::Params , Bio::EnsEMBL::Hive::Process
• param_substitute() : Bio::EnsEMBL::Hive::Params , Bio::EnsEMBL::Hive::Process
• parameters() : Bio::EnsEMBL::Hive::Analysis
• parse() : Bio::EnsEMBL::Hive::Utils::URL
• parse_cmdline_options() : Bio::EnsEMBL::Hive::Utils
• parse_report_source_line() : Bio::EnsEMBL::Hive::Meadow::LSF , Bio::EnsEMBL::Hive::Meadow
• parse_underscored_id_name() : Bio::EnsEMBL::Hive::DBSQL::DBAdaptor
• pass() : Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection
• password() : Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection
• pause() : Bio::EnsEMBL::Hive::Utils::Stopwatch
• perform_cleanup() : Bio::EnsEMBL::Hive::Worker
• pipeline_analyses() : Bio::EnsEMBL::Hive::PipeConfig::AnyCommands_conf , Bio::EnsEMBL::Hive::PipeConfig::ApplyToDatabases_conf , Bio::EnsEMBL::Hive::PipeConfig::CompressFiles_conf , Bio::EnsEMBL::Hive::PipeConfig::FailureTest_conf , Bio::EnsEMBL::Hive::PipeConfig::FastaSplitter_conf , Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf , Bio::EnsEMBL::Hive::PipeConfig::LongMult_conf , Bio::EnsEMBL::Hive::PipeConfig::LongMultSt_conf , Bio::EnsEMBL::Hive::PipeConfig::LongMultWf_conf , Bio::EnsEMBL::Hive::PipeConfig::MemlimitTest_conf , Bio::EnsEMBL::Hive::PipeConfig::RunListOfCommandsOnFarm_conf , Bio::EnsEMBL::Hive::PipeConfig::TableDumperZipper_conf , MiniPecanMulti_conf , MiniPecanSingle2_conf , MiniPecanSingle3_conf , MiniPecanSingle_conf
• pipeline_create_commands() : Bio::EnsEMBL::Hive::PipeConfig::FastaSplitter_conf , Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf , Bio::EnsEMBL::Hive::PipeConfig::LongMult_conf , Bio::EnsEMBL::Hive::PipeConfig::LongMultSt_conf , Bio::EnsEMBL::Hive::PipeConfig::LongMultWf_conf
• pipeline_name() : Bio::EnsEMBL::Hive::Meadow , Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf
• pipeline_url() : Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf
• pipeline_wide_parameters() : Bio::EnsEMBL::Hive::PipeConfig::EnsemblGeneric_conf , Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf , Bio::EnsEMBL::Hive::PipeConfig::LongMult_conf , Bio::EnsEMBL::Hive::PipeConfig::LongMultSt_conf , Bio::EnsEMBL::Hive::PipeConfig::LongMultWf_conf , Bio::EnsEMBL::Hive::PipeConfig::TableDumperZipper_conf
• pop() : Bio::EnsEMBL::Hive::Utils::RedirectStack
• port() : Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection
• post_cleanup() : Bio::EnsEMBL::Hive::RunnableDB::FailureTest
• pre_cleanup() : Bio::EnsEMBL::Hive::RunnableDB::FailureTest
• pre_options() : Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf
• preliminary_offer() : Bio::EnsEMBL::Hive::Limiter
• prepare() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor , Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection
• prev_job_error() : Bio::EnsEMBL::Hive::Worker
• prevent_disconnect() : Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection
• primary_key() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
• primary_key_constraint() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
• print_active_role_counts() : Bio::EnsEMBL::Hive::DBSQL::RoleAdaptor
• print_status_and_return_reasons_to_exit() : Bio::EnsEMBL::Hive::Queen
• priority() : Bio::EnsEMBL::Hive::Analysis
• process_id() : Bio::EnsEMBL::Hive::Worker
• process_options() : Bio::EnsEMBL::Hive::DependentOptions , Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf
• protected_prepare_execute() : Bio::EnsEMBL::Hive::DBSQL::DBConnection
• push() : Bio::EnsEMBL::Hive::Utils::RedirectStack