- c -

• cached_name() : Bio::EnsEMBL::Hive::Meadow
• can_be_empty() : Bio::EnsEMBL::Hive::Analysis
• can_respecialize() : Bio::EnsEMBL::Hive::Worker
• cause_of_death() : Bio::EnsEMBL::Hive::Worker
• check_blocking_control_rules() : Bio::EnsEMBL::Hive::AnalysisStats
• check_for_dead_workers() : Bio::EnsEMBL::Hive::Queen
• check_in_job() : Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
• check_in_worker() : Bio::EnsEMBL::Hive::Queen
• check_nothing_to_run_but_semaphored() : Bio::EnsEMBL::Hive::Queen
• check_object_present_in_db_by_content() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
• check_version_compatibility() : Bio::EnsEMBL::Hive::Meadow
• check_worker_is_alive_and_mine() : Bio::EnsEMBL::Hive::Meadow , Bio::EnsEMBL::Hive::Meadow::LOCAL , Bio::EnsEMBL::Hive::Meadow::LSF
• cleanup_worker_temp_directory() : Bio::EnsEMBL::Hive::Process
• cluster_2_nodes() : Bio::EnsEMBL::Hive::Utils::GraphViz
• collection() : Bio::EnsEMBL::Hive::Cacheable
• colour_offset() : Bio::EnsEMBL::Hive::Utils::GraphViz
• colour_scheme() : Bio::EnsEMBL::Hive::Utils::GraphViz
• column_set() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
• complete_early() : Bio::EnsEMBL::Hive::Process
• completed() : Bio::EnsEMBL::Hive::AnalysisJob
• condition_analysis() : Bio::EnsEMBL::Hive::AnalysisCtrlRule
• condition_analysis_url() : Bio::EnsEMBL::Hive::AnalysisCtrlRule
• config() : Bio::EnsEMBL::Hive::Configurable
• config_get() : Bio::EnsEMBL::Hive::Configurable
• config_hash() : Bio::EnsEMBL::Hive::Utils::Config
• config_set() : Bio::EnsEMBL::Hive::Configurable
• connect() : Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection
• connected() : Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection
• context() : Bio::EnsEMBL::Hive::Configurable
• continue() : Bio::EnsEMBL::Hive::Utils::Stopwatch
• control_rules_collection() : Bio::EnsEMBL::Hive::Analysis
• count_active_roles() : Bio::EnsEMBL::Hive::DBSQL::RoleAdaptor
• count_all() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
• count_pending_workers_by_rc_name() : Bio::EnsEMBL::Hive::Meadow::LOCAL , Bio::EnsEMBL::Hive::Meadow::LSF
• count_running_workers() : Bio::EnsEMBL::Hive::Meadow::LOCAL , Bio::EnsEMBL::Hive::Meadow::LSF , Bio::EnsEMBL::Hive::Valley
• create_cached_dba() : Bio::EnsEMBL::Hive::URLFactory
• create_new_worker() : Bio::EnsEMBL::Hive::Queen
• csvq() : Bio::EnsEMBL::Hive::Params
• current_role() : Bio::EnsEMBL::Hive::Worker