Class Index

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a	Hive::DataflowRule (Bio::EnsEMBL)	j	NotifyByEmail (Bio::EnsEMBL::Hive::RunnableDB)	SqlCmd (Bio::EnsEMBL::Hive::RunnableDB)
	DataflowRuleAdaptor (Bio::EnsEMBL::Hive::DBSQL)		o	SqlHealthcheck (Bio::EnsEMBL::Hive::RunnableDB)
Hive::Accumulator (Bio::EnsEMBL)	DBAdaptor (Bio::EnsEMBL::Hive::DBSQL)	JobFactory (Bio::EnsEMBL::Hive::RunnableDB)		SqlSchemaAdaptor (Bio::EnsEMBL::Hive::DBSQL)
AccumulatorAdaptor (Bio::EnsEMBL::Hive::DBSQL)	DbCmd (Bio::EnsEMBL::Hive::RunnableDB)	l	ObjectAdaptor (Bio::EnsEMBL::Hive::DBSQL)	StandaloneJob (Bio::EnsEMBL::Hive::Scripts)
AddTogether (Bio::EnsEMBL::Hive::RunnableDB::LongMult)	DBConnection (Bio::EnsEMBL::Hive::DBSQL)		p	StatementHandle (Bio::EnsEMBL::Hive::DBSQL)
Hive::Analysis (Bio::EnsEMBL)	Hive::DependentOptions (Bio::EnsEMBL)	Hive::Limiter (Bio::EnsEMBL)		Hive::Utils::Stopwatch (Bio::EnsEMBL)
AnalysisAdaptor (Bio::EnsEMBL::Hive::DBSQL)	DigitFactory (Bio::EnsEMBL::Hive::RunnableDB::LongMult)	Hive::Meadow::LOCAL (Bio::EnsEMBL)	Hive::Params (Bio::EnsEMBL)	Hive::Storable (Bio::EnsEMBL)
Hive::AnalysisCtrlRule (Bio::EnsEMBL)	Dummy (Bio::EnsEMBL::Hive::RunnableDB)	LogMessageAdaptor (Bio::EnsEMBL::Hive::DBSQL)	PartMultiply (Bio::EnsEMBL::Hive::RunnableDB::LongMult)	SystemCmd (Bio::EnsEMBL::Hive::RunnableDB)
AnalysisCtrlRuleAdaptor (Bio::EnsEMBL::Hive::DBSQL)	e	LongMult_conf (Bio::EnsEMBL::Hive::PipeConfig)	Hive::PipelineWideParameters (Bio::EnsEMBL)	t
AnalysisDataAdaptor (Bio::EnsEMBL::Hive::DBSQL)		LongMultSt_conf (Bio::EnsEMBL::Hive::PipeConfig)	PipelineWideParametersAdaptor (Bio::EnsEMBL::Hive::DBSQL)
Hive::AnalysisJob (Bio::EnsEMBL)	EnsemblGeneric_conf (Bio::EnsEMBL::Hive::PipeConfig)	LongMultSt_pyconf (Bio::EnsEMBL::Hive::PipeConfig)	Hive::Process (Bio::EnsEMBL)	TableDumperZipper_conf (Bio::EnsEMBL::Hive::PipeConfig)
AnalysisJobAdaptor (Bio::EnsEMBL::Hive::DBSQL)	f	LongMultWf_conf (Bio::EnsEMBL::Hive::PipeConfig)	q	Hive::Utils::Test (Bio::EnsEMBL)
Hive::AnalysisStats (Bio::EnsEMBL)		Hive::Meadow::LSF (Bio::EnsEMBL)		u
AnalysisStatsAdaptor (Bio::EnsEMBL::Hive::DBSQL)	FailureTest (Bio::EnsEMBL::Hive::RunnableDB)	m	Hive::Queen (Bio::EnsEMBL)
AnyCommands_conf (Bio::EnsEMBL::Hive::PipeConfig)	FailureTest_conf (Bio::EnsEMBL::Hive::PipeConfig)		r	Hive::Utils::URL (Bio::EnsEMBL)
ApplyToDatabases_conf (Bio::EnsEMBL::Hive::PipeConfig)	FastaFactory (Bio::EnsEMBL::Hive::RunnableDB)	Hive::Meadow (Bio::EnsEMBL)		Hive::URLFactory (Bio::EnsEMBL)
b	FastaSplitter_conf (Bio::EnsEMBL::Hive::PipeConfig)	MemlimitTest_conf (Bio::EnsEMBL::Hive::PipeConfig)	Hive::Utils::RedirectStack (Bio::EnsEMBL)	Hive::Utils (Bio::EnsEMBL)
	g	MetaAdaptor (Bio::EnsEMBL::Hive::DBSQL)	Hive::ResourceClass (Bio::EnsEMBL)	v
BaseAdaptor (Bio::EnsEMBL::Hive::DBSQL)		Hive::MetaParameters (Bio::EnsEMBL)	ResourceClassAdaptor (Bio::EnsEMBL::Hive::DBSQL)
c	Hive::Utils::Graph (Bio::EnsEMBL)	MiniPecanMulti_conf	Hive::ResourceDescription (Bio::EnsEMBL)	Hive::Valley (Bio::EnsEMBL)
	Hive::Utils::GraphViz (Bio::EnsEMBL)	MiniPecanSingle2_conf	ResourceDescriptionAdaptor (Bio::EnsEMBL::Hive::DBSQL)	Hive::Version (Bio::EnsEMBL)
Hive::Cacheable (Bio::EnsEMBL)	Hive::GuestProcess (Bio::EnsEMBL)	MiniPecanSingle3_conf	Hive::Role (Bio::EnsEMBL)	w
Hive::Utils::Collection (Bio::EnsEMBL)	h	MiniPecanSingle_conf	RoleAdaptor (Bio::EnsEMBL::Hive::DBSQL)
CompressFiles_conf (Bio::EnsEMBL::Hive::PipeConfig)		MySQLTransfer (Bio::EnsEMBL::Hive::RunnableDB)	RunListOfCommandsOnFarm_conf (Bio::EnsEMBL::Hive::PipeConfig)	Hive::Worker (Bio::EnsEMBL)
Hive::Utils::Config (Bio::EnsEMBL)	Hive (Bio::EnsEMBL)	n	RunWorker (Bio::EnsEMBL::Hive::Scripts)
Hive::Configurable (Bio::EnsEMBL)	HiveGeneric_conf (Bio::EnsEMBL::Hive::PipeConfig)		s
CoreDBConnection (Bio::EnsEMBL::Hive::DBSQL)	i	Hive::NakedTable (Bio::EnsEMBL)
d		NakedTableAdaptor (Bio::EnsEMBL::Hive::DBSQL)	Hive::Scheduler (Bio::EnsEMBL)
	InitPipeline (Bio::EnsEMBL::Hive::Scripts)
DatabaseDumper (Bio::EnsEMBL::Hive::RunnableDB)

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