Struct fasta_file_interface

Boost C++ Libraries

Struct fasta_file_interface

boost::genetics::fasta_file_interface

Synopsis

// In header: <boost/genetics/fasta.hpp>


struct fasta_file_interface {
  // construct/copy/destruct
  ~fasta_file_interface();

  // public member functions
  virtual void append(const std::string &) = 0;
  virtual const chromosome & find_chromosome(size_t) const = 0;
  virtual void 
  find_inexact(std::vector< fasta_result > &, const std::string &, size_t, 
               size_t, size_t, bool) = 0;
  virtual const chromosome & get_chromosome(size_t) const = 0;
  virtual size_t get_num_chromosomes() const = 0;
  virtual void make_index(size_t) = 0;
  virtual void write_ascii(std::ostream &) const = 0;
  virtual void write_binary(writer &) const = 0;
};

Description

`fasta_file_interface` public construct/copy/destruct

```
~fasta_file_interface();
```

`fasta_file_interface` public member functions

virtual void append(const std::string & filename) = 0;

virtual const chromosome & find_chromosome(size_t location) const = 0;

virtual void 
find_inexact(std::vector< fasta_result > & result, const std::string & dstr, 
             size_t max_distance, size_t max_results, size_t max_gap, 
             bool is_brute_force) = 0;

virtual const chromosome & get_chromosome(size_t index) const = 0;

virtual size_t get_num_chromosomes() const = 0;

virtual void make_index(size_t num_indexed_chars) = 0;

virtual void write_ascii(std::ostream & str) const = 0;

virtual void write_binary(writer & wr) const = 0;