- i -

• incomplete() : Bio::EnsEMBL::Hive::AnalysisJob
• increase_semaphore_count_for_jobid() : Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
• increment_a_counter() : Bio::EnsEMBL::Hive::DBSQL::AnalysisStatsAdaptor
• init() : Bio::EnsEMBL::Hive::Worker
• init_collections() : Bio::EnsEMBL::Hive::DBSQL::DBAdaptor
• init_pipeline() : Bio::EnsEMBL::Hive::Scripts::InitPipeline , Bio::EnsEMBL::Hive::Utils::Test
• inprogress_job_count() : Bio::EnsEMBL::Hive::AnalysisStats
• input_capacity() : Bio::EnsEMBL::Hive::AnalysisStats
• input_column_mapping() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
• input_id() : Bio::EnsEMBL::Hive::AnalysisJob , Bio::EnsEMBL::Hive::Process
• input_id_template() : Bio::EnsEMBL::Hive::DataflowRule
• input_job() : Bio::EnsEMBL::Hive::Process
• insertion_method() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor , Bio::EnsEMBL::Hive::NakedTable
• interval_update_work_done() : Bio::EnsEMBL::Hive::DBSQL::AnalysisStatsAdaptor
• interval_workers_with_unknown_usage() : Bio::EnsEMBL::Hive::Queen
• is_analysis_topup() : Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf
• is_counting() : Bio::EnsEMBL::Hive::Utils::Stopwatch
• is_fully_substituted_string() : Bio::EnsEMBL::Hive::DependentOptions
• is_fully_substituted_structure() : Bio::EnsEMBL::Hive::DependentOptions