- f -

• failed_job_count() : Bio::EnsEMBL::Hive::AnalysisStats
• failed_job_tolerance() : Bio::EnsEMBL::Hive::Analysis
• fan_cache() : Bio::EnsEMBL::Hive::AnalysisJob
• fetch() : Bio::EnsEMBL::Hive::URLFactory
• fetch_all() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
• fetch_all_by_analysis_id_status() : Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
• fetch_all_by_pattern() : Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor
• fetch_all_finished_roles_with_unfinished_jobs() : Bio::EnsEMBL::Hive::DBSQL::RoleAdaptor
• fetch_all_incomplete_jobs_by_role_id() : Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
• fetch_all_unfinished_roles_of_dead_workers() : Bio::EnsEMBL::Hive::DBSQL::RoleAdaptor
• fetch_by_analysis_id_and_input_id() : Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
• fetch_by_dbID() : Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
• fetch_by_logic_name_or_url() : Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor
• fetch_by_url_query() : Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor , Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
• fetch_input() : Bio::EnsEMBL::Hive::Process , Bio::EnsEMBL::Hive::RunnableDB::DatabaseDumper , Bio::EnsEMBL::Hive::RunnableDB::DbCmd , Bio::EnsEMBL::Hive::RunnableDB::Dummy , Bio::EnsEMBL::Hive::RunnableDB::FailureTest , Bio::EnsEMBL::Hive::RunnableDB::FastaFactory , Bio::EnsEMBL::Hive::RunnableDB::LongMult::AddTogether , Bio::EnsEMBL::Hive::RunnableDB::LongMult::DigitFactory , Bio::EnsEMBL::Hive::RunnableDB::LongMult::PartMultiply , Bio::EnsEMBL::Hive::RunnableDB::MySQLTransfer , Bio::EnsEMBL::Hive::RunnableDB::NotifyByEmail , Bio::EnsEMBL::Hive::RunnableDB::SqlHealthcheck
• fetch_input_ids_for_job_ids() : Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
• fetch_job_counts_hashed_by_status() : Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
• fetch_last_unfinished_by_worker_id() : Bio::EnsEMBL::Hive::DBSQL::RoleAdaptor
• fetch_overdue_workers() : Bio::EnsEMBL::Hive::Queen
• fetch_param_hash() : Bio::EnsEMBL::Hive::DBSQL::PipelineWideParametersAdaptor
• fetch_some_by_analysis_id_limit() : Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
• fetch_structures_for_job_ids() : Bio::EnsEMBL::Hive::DBSQL::AccumulatorAdaptor
• final_decision() : Bio::EnsEMBL::Hive::Limiter
• finalize_role() : Bio::EnsEMBL::Hive::DBSQL::RoleAdaptor
• find_all_by() : Bio::EnsEMBL::Hive::Utils::Collection
• find_all_by_pattern() : Bio::EnsEMBL::Hive::Utils::Collection
• find_all_sql_schema_patches() : Bio::EnsEMBL::Hive::DBSQL::SqlSchemaAdaptor
• find_available_meadow_responsible_for_worker() : Bio::EnsEMBL::Hive::Valley
• find_one_by() : Bio::EnsEMBL::Hive::Utils::Collection
• find_submodules() : Bio::EnsEMBL::Hive::Utils
• friendly_avg_job_runtime() : Bio::EnsEMBL::Hive::AnalysisStats
• from_date_to_seconds() : Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection
• from_seconds_to_date() : Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection