Index

A

addAngle (C++ function)

O

OpenMM::CustomIntegrator (C++ class) OpenMM::CustomIntegrator::addComputeGlobal (C++ function) OpenMM::CustomIntegrator::addComputePerDof (C++ function) OpenMM::CustomIntegrator::addComputeSum (C++ function) OpenMM::CustomIntegrator::addConstrainPositions (C++ function) OpenMM::CustomIntegrator::addConstrainVelocities (C++ function) OpenMM::CustomIntegrator::addGlobalVariable (C++ function) OpenMM::CustomIntegrator::addPerDofVariable (C++ function) OpenMM::CustomIntegrator::addUpdateContextState (C++ function) OpenMM::CustomIntegrator::beginIfBlock (C++ function) OpenMM::CustomIntegrator::beginWhileBlock (C++ function) OpenMM::CustomIntegrator::CustomIntegrator (C++ function) OpenMM::CustomIntegrator::endBlock (C++ function) OpenMM::CustomIntegrator::getComputationStep (C++ function) OpenMM::CustomIntegrator::getGlobalVariable (C++ function) OpenMM::CustomIntegrator::getGlobalVariableByName (C++ function) OpenMM::CustomIntegrator::getGlobalVariableName (C++ function) OpenMM::CustomIntegrator::getKineticEnergyExpression (C++ function) OpenMM::CustomIntegrator::getNumComputations (C++ function) OpenMM::CustomIntegrator::getNumGlobalVariables (C++ function) OpenMM::CustomIntegrator::getNumPerDofVariables (C++ function) OpenMM::CustomIntegrator::getPerDofVariable (C++ function) OpenMM::CustomIntegrator::getPerDofVariableByName (C++ function) OpenMM::CustomIntegrator::getPerDofVariableName (C++ function) OpenMM::CustomIntegrator::getRandomNumberSeed (C++ function) OpenMM::CustomIntegrator::setGlobalVariable (C++ function) OpenMM::CustomIntegrator::setGlobalVariableByName (C++ function) OpenMM::CustomIntegrator::setKineticEnergyExpression (C++ function) OpenMM::CustomIntegrator::setPerDofVariable (C++ function) OpenMM::CustomIntegrator::setPerDofVariableByName (C++ function) OpenMM::CustomIntegrator::setRandomNumberSeed (C++ function) OpenMM::CustomIntegrator::step (C++ function) OpenMM::Force (C++ class) OpenMM::Force::Force (C++ function) OpenMM::Force::getForceGroup (C++ function) OpenMM::Force::setForceGroup (C++ function) OpenMM::Force::usesPeriodicBoundaryConditions (C++ function) OpenMM::Force::~Force (C++ function) OpenMM::Integrator (C++ class) OpenMM::Integrator::getConstraintTolerance (C++ function) OpenMM::Integrator::getStepSize (C++ function) OpenMM::Integrator::Integrator (C++ function) OpenMM::Integrator::setConstraintTolerance (C++ function) OpenMM::Integrator::setStepSize (C++ function) OpenMM::Integrator::step (C++ function) OpenMM::Integrator::~Integrator (C++ function) OpenMM::NonbondedForce (C++ class) OpenMM::NonbondedForce::addException (C++ function) OpenMM::NonbondedForce::addParticle (C++ function) OpenMM::NonbondedForce::createExceptionsFromBonds (C++ function) OpenMM::NonbondedForce::getCutoffDistance (C++ function) OpenMM::NonbondedForce::getEwaldErrorTolerance (C++ function)

OpenMM::NonbondedForce::getExceptionParameters (C++ function) OpenMM::NonbondedForce::getNonbondedMethod (C++ function) OpenMM::NonbondedForce::getNumExceptions (C++ function) OpenMM::NonbondedForce::getNumParticles (C++ function) OpenMM::NonbondedForce::getParticleParameters (C++ function) OpenMM::NonbondedForce::getPMEParameters (C++ function) OpenMM::NonbondedForce::getPMEParametersInContext (C++ function) OpenMM::NonbondedForce::getReactionFieldDielectric (C++ function) OpenMM::NonbondedForce::getReciprocalSpaceForceGroup (C++ function) OpenMM::NonbondedForce::getSwitchingDistance (C++ function) OpenMM::NonbondedForce::getUseDispersionCorrection (C++ function) OpenMM::NonbondedForce::getUseSwitchingFunction (C++ function) OpenMM::NonbondedForce::NonbondedForce (C++ function) OpenMM::NonbondedForce::setCutoffDistance (C++ function) OpenMM::NonbondedForce::setEwaldErrorTolerance (C++ function) OpenMM::NonbondedForce::setExceptionParameters (C++ function) OpenMM::NonbondedForce::setNonbondedMethod (C++ function) OpenMM::NonbondedForce::setParticleParameters (C++ function) OpenMM::NonbondedForce::setPMEParameters (C++ function) OpenMM::NonbondedForce::setReactionFieldDielectric (C++ function) OpenMM::NonbondedForce::setReciprocalSpaceForceGroup (C++ function) OpenMM::NonbondedForce::setSwitchingDistance (C++ function) OpenMM::NonbondedForce::setUseDispersionCorrection (C++ function) OpenMM::NonbondedForce::setUseSwitchingFunction (C++ function) OpenMM::NonbondedForce::updateParametersInContext (C++ function) OpenMM::NonbondedForce::usesPeriodicBoundaryConditions (C++ function) OpenMM::Platform (C++ class) OpenMM::System (C++ class) OpenMM::System::addConstraint (C++ function) OpenMM::System::addForce (C++ function) OpenMM::System::addParticle (C++ function) OpenMM::System::getConstraintParameters (C++ function) OpenMM::System::getDefaultPeriodicBoxVectors (C++ function) OpenMM::System::getForce (C++ function), [1] OpenMM::System::getNumConstraints (C++ function) OpenMM::System::getNumForces (C++ function) OpenMM::System::getNumParticles (C++ function) OpenMM::System::getParticleMass (C++ function) OpenMM::System::getVirtualSite (C++ function) OpenMM::System::isVirtualSite (C++ function) OpenMM::System::removeConstraint (C++ function) OpenMM::System::removeForce (C++ function) OpenMM::System::setConstraintParameters (C++ function) OpenMM::System::setDefaultPeriodicBoxVectors (C++ function) OpenMM::System::setParticleMass (C++ function) OpenMM::System::setVirtualSite (C++ function) OpenMM::System::System (C++ function) OpenMM::System::usesPeriodicBoundaryConditions (C++ function) OpenMM::System::~System (C++ function) OpenMM::VerletIntegrator (C++ class) OpenMM::VerletIntegrator::step (C++ function) OpenMM::VerletIntegrator::VerletIntegrator (C++ function)