Input data and parameters 

Samples

6h /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/6h
6h_3 /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/6h_3
6h_2 /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/6h_2
18h_2 /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/18h_2
NI /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/NI
18h_3 /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/18h_3
18h /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/18h
IR /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/IR
IR_2 /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/IR_2
NI_2 /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/NI_2
IR_3 /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/IR_3
NI_3 /data/qualimap_release_data/multisample_bamqc/gh2ax_chip_seq/NI_3

Summary 

Globals

Number of samples 12

Sample name Coverage mean Coverage std GC percentage Mapping quality mean Insert size median
18h 0.76 4.5 42.65 32.21 0.0
18h_2 1.29 3.78 49.18 32.26 0.0
18h_3 0.86 4.23 42.94 32.26 0.0
6h 0.89 5.51 42.18 32.26 0.0
6h_2 1.16 4.01 48.28 32.23 0.0
6h_3 1.06 5.25 42.55 32.39 0.0
NI 0.78 4.46 42.39 32.01 0.0
NI_2 1.24 4.0 48.47 32.27 0.0
NI_3 1.16 6.17 42.95 32.38 0.0
IR 0.91 5.54 41.07 32.35 0.0
IR_2 1.35 4.51 47.97 32.5 0.0
IR_3 1.0 4.67 42.75 32.52 0.0

PCA 

Coverage Across Reference 

Coverage Histogram (0-50X) 

Genome Fraction Coverage 

Duplication Rate Histogram 

Mapped reads GC-content 

Mapped Reads Clipping Profile 

Mapped Reads GC-content Distribution 

Mapping Quality Across Reference 

Mapping Quality Histogram 

Insert Size Across Reference 

Insert Size Histogram