• view commit • date: Tue Dec 23 08:58:45 2014 -0800 -- Initial commit.
  • view commit • date: Tue Dec 23 09:22:14 2014 -0800 -- Added README template to fill in later.
  • view commit • date: Tue Dec 23 09:44:33 2014 -0800 -- Changed to a better README template.
  • view commit • date: Tue Dec 23 16:41:33 2014 -0800 -- Initial commit of Allen ipython notebook.
  • view commit • date: Mon Dec 29 22:32:25 2014 -0800 -- Added MIT license, changed AllenBrainAPI.ipynb to AllenBrainAPI_image_download.ipynb, updated description on README.md
  • view commit • date: Mon Dec 29 22:34:00 2014 -0800 -- Fixed typo in readme
  • view commit • date: Thu Jan 1 17:56:03 2015 -0800 -- Created file AllenBrainAtlasAPI_annotation_align.ipynb
  • view commit • date: Fri Jan 2 02:33:23 2015 -0800 -- Added svg download and display functionality
  • view commit • date: Sat Jan 3 17:57:28 2015 -0800 -- added method to correctly overlay svg.
  • view commit • date: Mon Jan 5 17:38:21 2015 -0800 -- Delete AllenBrainAPI.ipynb
  • view commit • date: Mon Jan 5 18:10:47 2015 -0800 -- scaled the lab image and added SVG annotation overlay.
  • view commit • date: Mon Jan 5 18:27:53 2015 -0800 -- Initial commit of annotation_align.ipynb
  • view commit • date: Mon Jan 5 19:12:48 2015 -0800 -- Added discussion and started first attempt at alignment using scikit-image
  • view commit • date: Tue Jan 6 11:24:26 2015 -0800 -- Added AllenBrainAtlasAPI_annotation_overlay.ipynb
  • view commit • date: Tue Jan 6 11:26:47 2015 -0800 -- Delete AllenBrainAtlasAPI_annotation_align.ipynb
  • view commit • date: Tue Jan 6 13:32:49 2015 -0800 -- cleaned up file directory and updated soft links in notebooks
  • view commit • date: Thu Jan 8 15:24:14 2015 -0800 -- adding some files that were put into new directories
  • view commit • date: Fri Jan 9 17:00:53 2015 -0800 -- updated scikit-image to dev version to fix some errors (see #14 on github issues). Added %matplotlib inline to notebooks to try to correctly display figures.
  • view commit • date: Mon Jan 12 13:22:53 2015 -0800 -- this is a test commit
  • view commit • date: Wed Jan 14 15:02:38 2015 -0800 -- created bash script for generating a changelog from git commits. Script produces an html file that can be viewed in browser.
  • view commit • date: Thu Jan 15 13:03:50 2015 -0800 -- fixed canny and image pyramid.
  • view commit • date: Thu Jan 15 13:13:47 2015 -0800 -- Fixed canny in annotation_align
  • view commit • date: Thu Jan 15 14:07:47 2015 -0800 -- Got a roughly working annotation align. Although still having trouble with the hough transform actually drawing anything approaching an ellipse. See issue #16 for discussion
  • view commit • date: Sat Jan 17 14:21:11 2015 -0800 -- Updated annotation_align and image pyramid. Provided save functionality for image pyramid. Created label_image_regions for using marching squares approach to segmentation and created morphological_filtering for experimenting with various morphological filtering techniques.
  • view commit • date: Tue Jan 20 20:54:23 2015 -0800 -- Created registration.ipynb. Corrected an error in image_pyramid.ipynb to print out correct downsampled resolution. Generated downsampled.jpg. Added data/img/test043_TL/ as a directory of an example mouse brain.
  • view commit • date: Tue Jan 20 23:11:49 2015 -0800 -- Updated changelog
  • view commit • date: Mon Feb 2 15:39:35 2015 -0800 -- Updated changelog, modified annotation_align and image pyramid. Added canny_edge, morphological_filtering, and registration to the experimental notebooks directory.
  • view commit • date: Mon Feb 2 15:43:39 2015 -0800 -- Updated changelog
  • view commit • date: Thu Feb 5 17:18:55 2015 -0800 -- Created skeleton project directory for production code. Successfully passed initial nose test. Successfully installed using python setup.py install.
  • view commit • date: Thu Feb 5 17:27:02 2015 -0800 -- Added .gitignore file.
  • view commit • date: Thu Feb 5 19:03:30 2015 -0800 -- Changed directory structure. Main build project now in allen_api_wrapper.
  • view commit • date: Thu Feb 5 19:21:28 2015 -0800 -- Changed print statements to include parentheses.
  • view commit • date: Thu Feb 5 19:24:38 2015 -0800 -- Wrote a better readme file.
  • view commit • date: Thu Feb 5 19:26:54 2015 -0800 -- Changed main readme to be more descriptive.
  • view commit • date: Thu Feb 5 19:52:51 2015 -0800 -- Changed .gitingnore to ignore *~
  • view commit • date: Thu Feb 5 19:57:32 2015 -0800 -- Created hardlink of README.md and .gitignore from workspace to top directory.
  • view commit • date: Thu Feb 5 20:00:29 2015 -0800 -- .gitignore now ignores ipython notebook checkpoints
  • view commit • date: Mon Feb 9 16:26:11 2015 -0800 -- Added files to gitignore.
  • view commit • date: Mon Feb 9 16:45:48 2015 -0800 -- Created new directory 'registration'. Added register.py and __init__.py.
  • view commit • date: Mon Feb 9 21:00:22 2015 -0800 -- Added attribution
  • view commit • date: Thu Feb 19 16:40:51 2015 -0800 -- created feature_pipeline.ipynb
  • view commit • date: Thu Feb 26 17:12:30 2015 -0800 -- added new registration methods, pipeline, and parameters
  • view commit • date: Fri Feb 27 12:07:32 2015 -0800 -- Synching work computer with repo.
  • view commit • date: Fri Feb 27 12:11:32 2015 -0800 -- Added explicit path to install in README
  • view commit • date: Fri Feb 27 12:14:22 2015 -0800 -- Updated readme to include explicit install path.