library('rgbif')name_backbone(name='Helianthus', rank='genus', kingdom='plants')#> $usageKey
#> [1] 3119134
#>
#> $scientificName
#> [1] "Helianthus L."
#>
#> $canonicalName
#> [1] "Helianthus"
#>
#> $rank
#> [1] "GENUS"
#>
#> $status
#> [1] "ACCEPTED"
#>
#> $confidence
#> [1] 97
#>
#> $matchType
#> [1] "EXACT"
#>
#> $kingdom
#> [1] "Plantae"
#>
#> $phylum
#> [1] "Tracheophyta"
#>
#> $order
#> [1] "Asterales"
#>
#> $family
#> [1] "Asteraceae"
#>
#> $genus
#> [1] "Helianthus"
#>
#> $kingdomKey
#> [1] 6
#>
#> $phylumKey
#> [1] 7707728
#>
#> $classKey
#> [1] 220
#>
#> $orderKey
#> [1] 414
#>
#> $familyKey
#> [1] 3065
#>
#> $genusKey
#> [1] 3119134
#>
#> $synonym
#> [1] FALSE
#>
#> $class
#> [1] "Magnoliopsida"dataset_search(query="stockholm", limit = 10)#> $meta
#> offset limit endOfRecords count
#> 1 0 3 TRUE 3
#>
#> $data
#> # A tibble: 3 × 8
#> datasetTitle
#> <chr>
#> 1 SBT-Living
#> 2 gamma 91
#> 3 Wissenschaftliche Ergebnisse der schwedischen zoologischen Expedition nach
#> # ... with 7 more variables: datasetKey <chr>, type <chr>,
#> # hostingOrganization <chr>, hostingOrganizationKey <chr>,
#> # publishingOrganization <chr>, publishingOrganizationKey <chr>,
#> # publishingCountry <chr>
#>
#> $facets
#> NULL
#>
#> $descriptions
#> $descriptions$`SBT-Living`
#> [1] "Database on living organism from Bergius Botanical Garden, Stockholm, Sweden."
#>
#> $descriptions$`gamma 91`
#> [1] "This dataset contains the digitized treatments in Plazi based on the original book chapter Carolus Linnaeus (1758): gamma 91. In: Systema naturae per regna tria naturae, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Laurentii Salvii, Holmiae [= Stockholm].: 513, DOI: 10.5962/bhl.title.542"
#>
#> $descriptions$`Wissenschaftliche Ergebnisse der schwedischen zoologischen Expedition nach dem Kilimanjaro, dem Meru und den umgebenden Massaisteppen Deutsch-Ostafrikas 1905 - 1906 ..., Band 2, Abt. 8.`
#> [1] "This dataset contains the digitized treatments in Plazi based on the original book / thesis / monograph Sjoestedt, Y. (1909): Wissenschaftliche Ergebnisse der schwedischen zoologischen Expedition nach dem Kilimanjaro, dem Meru und den umgebenden Massaisteppen Deutsch-Ostafrikas 1905 - 1906 ..., Band 2, Abt. 8. Stockholm: Palmquist, URL: http://hdl.handle.net/10199/15424"Two interfaces, one with more options, but a little slower
occ_search(scientificName = 'Pulsatilla patens', limit=10)#> Records found [2326]
#> Records returned [10]
#> No. unique hierarchies [1]
#> No. media records [5]
#> No. facets [0]
#> Args [scientificName=Pulsatilla patens, limit=10, offset=0, fields=all]
#> # A tibble: 10 × 83
#> name key decimalLatitude decimalLongitude
#> <chr> <int> <dbl> <dbl>
#> 1 Pulsatilla patens 1323004927 41.21990 -105.36418
#> 2 Pulsatilla patens 1291095633 38.95827 -106.99710
#> 3 Pulsatilla patens 1291105397 38.98021 -106.97910
#> 4 Pulsatilla patens 1291105402 38.98034 -106.97908
#> 5 Pulsatilla patens 1228007947 57.84383 27.43936
#> 6 Pulsatilla patens 1315045243 49.60839 -96.09044
#> 7 Pulsatilla patens 1228008856 58.65087 26.89444
#> 8 Pulsatilla patens 1135664771 57.69870 18.66510
#> 9 Pulsatilla patens 1228009311 58.05958 26.11485
#> 10 Pulsatilla patens 1135293476 57.72170 18.69630
#> # ... with 79 more variables: issues <chr>, datasetKey <chr>,
#> # publishingOrgKey <chr>, publishingCountry <chr>, protocol <chr>,
#> # lastCrawled <chr>, lastParsed <chr>, crawlId <int>, extensions <chr>,
#> # basisOfRecord <chr>, taxonKey <int>, kingdomKey <int>,
#> # phylumKey <int>, classKey <int>, orderKey <int>, familyKey <int>,
#> # genusKey <int>, speciesKey <int>, scientificName <chr>, kingdom <chr>,
#> # phylum <chr>, order <chr>, family <chr>, genus <chr>, species <chr>,
#> # genericName <chr>, specificEpithet <chr>, infraspecificEpithet <chr>,
#> # taxonRank <chr>, dateIdentified <chr>,
#> # coordinateUncertaintyInMeters <dbl>, year <int>, month <int>,
#> # day <int>, eventDate <chr>, modified <chr>, lastInterpreted <chr>,
#> # references <chr>, license <chr>, identifiers <chr>, facts <chr>,
#> # relations <chr>, geodeticDatum <chr>, class <chr>, countryCode <chr>,
#> # country <chr>, rightsHolder <chr>, identifier <chr>,
#> # verbatimEventDate <chr>, datasetName <chr>, verbatimLocality <chr>,
#> # gbifID <chr>, collectionCode <chr>, occurrenceID <chr>, taxonID <chr>,
#> # recordedBy <chr>, catalogNumber <chr>,
#> # http...unknown.org.occurrenceDetails <chr>, institutionCode <chr>,
#> # rights <chr>, eventTime <chr>, identificationID <chr>,
#> # individualCount <int>, habitat <chr>, footprintWKT <chr>,
#> # municipality <chr>, identificationVerificationStatus <chr>,
#> # locationID <chr>, identifiedBy <chr>, higherClassification <chr>,
#> # occurrenceRemarks <chr>, coordinatePrecision <dbl>, elevation <dbl>,
#> # elevationAccuracy <dbl>, depth <dbl>, depthAccuracy <dbl>,
#> # stateProvince <chr>, county <chr>, locality <chr>Another with less options, optimized for speed
(key <- name_backbone(name='Encelia californica')$speciesKey)#> [1] 3118771occ_data(taxonKey = key, limit = 4)#> Records found [1542]
#> Records returned [4]
#> Args [taxonKey=3118771, limit=4, offset=0]
#> # A tibble: 4 × 59
#> name key decimalLatitude decimalLongitude
#> <chr> <int> <dbl> <dbl>
#> 1 Encelia californica 1305117876 34.17704 -118.0971
#> 2 Encelia californica 1291069011 33.06906 -117.0884
#> 3 Encelia californica 1229925668 34.18108 -118.0964
#> 4 Encelia californica 1249277427 32.54470 -117.1221
#> # ... with 55 more variables: issues <chr>, datasetKey <chr>,
#> # publishingOrgKey <chr>, publishingCountry <chr>, protocol <chr>,
#> # lastCrawled <chr>, lastParsed <chr>, crawlId <int>,
#> # basisOfRecord <chr>, taxonKey <int>, kingdomKey <int>,
#> # phylumKey <int>, classKey <int>, orderKey <int>, familyKey <int>,
#> # genusKey <int>, scientificName <chr>, kingdom <chr>, phylum <chr>,
#> # order <chr>, family <chr>, genus <chr>, genericName <chr>,
#> # specificEpithet <chr>, taxonRank <chr>, dateIdentified <chr>,
#> # year <int>, month <int>, day <int>, eventDate <chr>, modified <chr>,
#> # lastInterpreted <chr>, references <chr>, license <chr>,
#> # geodeticDatum <chr>, class <chr>, countryCode <chr>, country <chr>,
#> # rightsHolder <chr>, identifier <chr>, verbatimEventDate <chr>,
#> # datasetName <chr>, verbatimLocality <chr>, gbifID <chr>,
#> # collectionCode <chr>, occurrenceID <chr>, taxonID <chr>,
#> # recordedBy <chr>, catalogNumber <chr>,
#> # `http://unknown.org/occurrenceDetails` <chr>, institutionCode <chr>,
#> # rights <chr>, identificationID <chr>,
#> # coordinateUncertaintyInMeters <dbl>, eventTime <chr>Search for names with any name_* functions, then using taxonomic Ids search for occurrences with occ_search() or occ_data.