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rOpenSci Biodiversity Suite

Scott Chamberlain

23 January, 2017

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Taxonomy

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Taxonomy packages

  • taxize - Taxonomic toolbelt
  • taxizesoap - Taxonomic toolbelt (SOAP)
  • ritis - ITIS client (avail. in taxize)
  • taxizedb - Access to SQL dumps
  • wikitaxa - Taxonomy from Wiki-pedia/-species/-commons
  • worrms - WORMS client (avail. in taxize)
  • natserv - Natureserve client (avail. in taxize)
  • taxa - Taxonomic classes to be used by other pkgs (coming soon)
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Occurrences

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Occurrence packages

  • spocc - One client to rule them all
  • rgbif - GBIF data (avail. in spocc)
  • AntWeb - AntWeb ant data (avail. in spocc)
  • ecoengine - Berekeley Ecoengine client (avail. in spocc)
  • rinat - iNaturalist client (avail. in spocc)
  • rbison - USGS BISON client (avail. in spocc)
  • rebird - eBird data (avail. in spocc)
  • rvertnet - VertNet data (avail. in spocc)
  • rfishbase - Fishbase.org data
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